CentroidFold / CentroidAlifold

CentroidFold based on a generalized centroid estimator is one of the most accurate tools for predicting RNA secondary structures. See the original paper for the details of the algorithm.

CentroidFold Web Server — by Kengo Sato — last modified 2009-09-19 00:24

 

Link to the original paper — by Michiaki Hamada — last modified 2009-06-09 02:49

 

README for the software — by Kengo Sato — last modified 2008-12-20 01:09

 

Download — by Kengo Sato — last modified 2008-12-19 02:50

 

Figures — by Michiaki Hamada — last modified 2008-10-04 06:42

Each directory contains figures (PDF format) in the paper as follows: single: secondary structure predictions from an RNA sequence aln : common secondary structure predictions aln-n : common secondary structure predictions of 2,4,6,8,10 sequences

Help for Web Application — by Mituyama Toutai — last modified 2010-01-13 02:46

CentroidFold lets you get a predicted secondary structure for a given RNA sequence and a predicted common secondary structure for a given multiple-alignment.

Help Figures — by Mituyama Toutai — last modified 2008-12-25 04:34

 

ISMB2009 — by Michiaki Hamada — last modified 2009-06-24 02:00