CentroidFold

CentroidFold based on a generalized centroid estimator is one of the most accurate tools for predicting RNA secondary structures. See the original paper for the details of the algorithm.

README for the software — by Kengo Sato — last modified 2008-08-14 00:10

 

Download — by Kengo Sato — last modified 2008-06-21 01:13

 

Figures — by Michiaki Hamada — last modified 2008-10-04 06:42

Each directory contains figures (PDF format) in the paper as follows: single: secondary structure predictions from an RNA sequence aln : common secondary structure predictions aln-n : common secondary structure predictions of 2,4,6,8,10 sequences

Rawdata and scripts — by Michiaki Hamada — last modified 2008-10-04 06:42

Each directory contains raw data and R script, which is used for creating figures in the paper as follows: single: secondary structure predictions from an RNA sequence aln : common secondary structure predictions aln-n : common secondary structure predictions of 2,4,6,8,10 sequences *.R in each directory is a script for creating the figures whose format is PDF.

Help for Web Application — by Mituyama Toutai — last modified 2008-08-08 21:32

CentroidFold web application lets you get a predicted RNA secondary structure for a given RNA sequence. Please refer to this page when you have a question.

Sequence Length vs. Computation Time — by Mituyama Toutai — last modified 2008-08-08 21:32