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CentroidFold

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CentroidFold based on a generalized centroid estimator is one of the most accurate tools for predicting RNA secondary structures. See the original paper for the details of the algorithm.

README for the software by Kengo Sato — last modified 2008-08-14 00:10
 
Download by Kengo Sato — last modified 2008-06-21 01:13
 
Figures by Michiaki Hamada — last modified 2008-10-04 06:42
Each directory contains figures (PDF format) in the paper as follows: single: secondary structure predictions from an RNA sequence aln : common secondary structure predictions aln-n : common secondary structure predictions of 2,4,6,8,10 sequences
Rawdata and scripts by Michiaki Hamada — last modified 2008-10-04 06:42
Each directory contains raw data and R script, which is used for creating figures in the paper as follows: single: secondary structure predictions from an RNA sequence aln : common secondary structure predictions aln-n : common secondary structure predictions of 2,4,6,8,10 sequences *.R in each directory is a script for creating the figures whose format is PDF.
Help for Web Application by Mituyama Toutai — last modified 2008-08-08 21:32
CentroidFold web application lets you get a predicted RNA secondary structure for a given RNA sequence. Please refer to this page when you have a question.
Sequence Length vs. Computation Time by Mituyama Toutai — last modified 2008-08-08 21:32
 

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