Murlet is a practical alignment tool for structural RNA sequences. It is based on the Sankoff algorithm and uses an efficient scoring system that considerably reduces the time and space requirements without degrading alignment quality.
Murlet: a practical multiple alignment tool for structural RNA sequences.
Web ServerAvailable at http://murlet.ncrna.org/murlet/murlet.html
Dataset (tar gz format)murlet_dataset.tgz
see readme.txt for description.
C++ Source Code (tar gz format)
murlet-0_0_1.tgz (Updated April, 18, 2011)
Click here for a summary of experimental results presented in our paper.
For more details, see the above reference.