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Dataset (readme)

by Mituyama Toutai last modified 2007-05-22 23:31
The dataset used in the paper:
Hisanori Kiryu, Yasuo Tabei, Taishin Kin, and Kiyoshi Asai.
Murlet: a practical multiple alignment tool for structural RNA sequences.
submitted to Bioinformatics.

dataset1_stockholm.txt:
85 multiple alignments extracted from Rfam7.0 database. The number of
families is 17. For each family, there are 5 sub alignments of 10
sequences.

dataset2_stockholm.txt:
188 multiple alignments of 4 sequences taken from the Hammerhead_3
ribozyme family in the Rfam7.0 database.

Reference:
Hisanori Kiryu, Yasuo Tabei, Taishin Kin, and Kiyoshi Asai.
Murlet: a practical multiple alignment tool for structural RNA sequences.
submitted to Bioinformatics.

Sam Griffiths-Jones, Alex Bateman, Mhairi Marshall, Ajay Khanna, and
Sean R Eddy. Rfam: an RNA family database.
Nucleic Acids Res, 31(1):43941, 2003.

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