SCARNA_LM

SCARNA_LM (SCARNA Local Multiple) is a local multiple aligner for RNA sequences. It is based on a discriminative pairwise alignment model which incorporates secondary structure features as base pairing probability calculrated by Rfold, and uses an efficient local multiple alignment construction procedure proposed by Phuong et al for local multiple alignment of protein sequences. As postprocessing, it calcurates global multiple alignments via MXSCARNA.

DOWNLOAD — by Yasuo Tabei — last modified 2009-05-15 21:06

 

SUPPLEMENTARY INFORMATION — by Yasuo Tabei — last modified 2009-01-17 09:55

 

learning_dataset.tar.gz — by Yasuo Tabei — last modified 2009-01-17 09:55

 

dataset.tar.gz — by Yasuo Tabei — last modified 2009-01-17 09:55

 

cross_varidation_dataset.tar.gz — by Yasuo Tabei — last modified 2009-03-10 11:22

 

DOWNLOAD — by Yasuo Tabei — last modified 2009-04-14 02:59

 

scarna_lm_ver2.1.tar.gz — by Yasuo Tabei — last modified 2009-05-01 00:44

 

scarna_lm_ver2.2.tar.gz — by Yasuo Tabei — last modified 2009-05-15 21:07