A new software that calculates base-pairing probabilities on Hamming distance
from the given canonical secondary structure.
 Taichi Hagio, Shun Sakuraba, Junichi Iwakiri, Ryota Mori, Kiyoshi Asai, Capturing Alternative Secondary Structures of RNA by Decomposition of Base Pairing Probabilities, BMC Bioinformatics, to appear.
 Ryota Mori, Michiaki Hamada, Kiyoshi Asai (2014) Efficient calculation of exact probability distributions of integer features on RNA secondary structures. BMC Genomics201415(Suppl 10):S6 DOI: 10.1186/1471-2164-15-S10-S6