RNAmine is a software tool to extract the structural motifs from a set of RNA sequences. The potential secondary structures of the RNA sequences are represented by directed graphs, and the common secondary structures are extracted by using graph mining technique.
The following paper is under review.
Michiaki Hamada, Koji Tsuda, Taku Kudo, Taishin Kin, Kiyoshi Asai:
Mining frequent stem patterns from unaligned RNA sequences.