Rfold

Rfold computes local base pairing probabilities for long DNA sequences.

Reference

Rfold: An exact algorithm for computing local base pairing probabilities,
Hisanori Kiryu; Taishin Kin; Kiyoshi Asai,
Bioinformatics 2007; doi: 10.1093/bioinformatics/btm591,
Supplement: rfold_suppl.pdf (143.23 KB)

Source Code

• Rfold source code (tar+gz format): rfold-0.1-2.tgz (139.00 KB)
• readme file for source code:  rfold-readme.txt (4.74 KB)

Dataset

• Rfold dataset (tar.gz format):  rfold_dataset.tgz (413.36 KB)
• readme file for dataset:  rfold-readme_dataset.txt (1.03 KB)

Experimental Results

For more information, see the original reference.