Rfold

Rfold computes local base pairing probabilities for long DNA sequences.

Reference

Rfold: An exact algorithm for computing local base pairing probabilities,
Hisanori Kiryu; Taishin Kin; Kiyoshi Asai,
Bioinformatics 2007; doi: 10.1093/bioinformatics/btm591,
Supplement: rfold_suppl.pdf (1461 ダウンロード )

Source Code

• Rfold source code (tar+gz format): rfold-0.1-2.tgz (1129 ダウンロード )
• readme file for source code:  rfold-readme.txt (1038 ダウンロード )

Dataset

• Rfold dataset (tar.gz format):  rfold_dataset.tgz (754 ダウンロード )
• readme file for dataset:  rfold-readme_dataset.txt (909 ダウンロード )

Experimental Results

For more information, see the original reference.