Rfold
Rfold computes local base pairing probabilities for long DNA sequences.
Reference
Rfold: An exact algorithm for computing local base pairing probabilities,
Hisanori Kiryu; Taishin Kin; Kiyoshi Asai,
Bioinformatics 2007; doi: 10.1093/bioinformatics/btm591,
Supplement:
rfold_suppl.pdf (143 KB)
Source Code
- Rfold source code (tar+gz format): rfold-0.1-2.tgz (139 KB)
- readme file for source code: rfold-readme.txt (5 KB)
Dataset
- Rfold dataset (tar.gz format): rfold_dataset.tgz (413 KB)
- readme file for dataset: rfold-readme_dataset.txt (1 KB)
Experimental Results
For more information, see the original reference.