Rfold

Rfold computes local base pairing probabilities for long DNA sequences.

Reference

Rfold: An exact algorithm for computing local base pairing probabilities,
Hisanori Kiryu; Taishin Kin; Kiyoshi Asai,
Bioinformatics 2007; doi: 10.1093/bioinformatics/btm591,
Supplement: rfold_suppl.pdf (143 KB)

Source Code

• Rfold source code (tar+gz format): rfold-0.1-2.tgz (139 KB)
• readme file for source code:  rfold-readme.txt (5 KB)

Dataset

• Rfold dataset (tar.gz format):  rfold_dataset.tgz (413 KB)
• readme file for dataset:  rfold-readme_dataset.txt (1 KB)

Experimental Results

For more information, see the original reference.