Murlet is a practical alignment tool for structural RNA sequences. It is based on the Sankoff algorithm and uses an efficient scoring system that considerably reduces the time and space requirements without degrading alignment quality.


Murlet: a practical multiple alignment tool for structural RNA sequences.
Hisanori Kiryu, Yasuo Tabei, Taishin Kin, and Kiyoshi Asai
Bioinformatics, doi:10.1093/bioinformatics/btm146.
Supplementary Text: murlet_suppl.pdf (76 KB)

Dataset (tar gz format)

murlet_dataset.tgz (162 KB)
see readme_dataset.txt (856 B) for description.

C++ Source Code

murlet-0_0_1.tgz (1 MB) (Updated April, 18, 2011)
murlet.tgz (325 KB) (Original Version. March, 23, 2008)
see readme.txt (4 KB) for description.

Experimental Results

A summary of experimental results presented in our paper.

For more details, see the above reference.