Murlet

Murlet is a practical alignment tool for structural RNA sequences. It is based on the Sankoff algorithm and uses an efficient scoring system that considerably reduces the time and space requirements without degrading alignment quality.

Reference

Murlet: a practical multiple alignment tool for structural RNA sequences.
Hisanori Kiryu, Yasuo Tabei, Taishin Kin, and Kiyoshi Asai
Bioinformatics, doi:10.1093/bioinformatics/btm146.
Supplementary Text: murlet_suppl.pdf (756 ダウンロード )

Dataset (tar gz format)

murlet_dataset.tgz (662 ダウンロード )
see readme_dataset.txt (624 ダウンロード ) for description.

C++ Source Code

murlet-0_0_1.tgz (608 ダウンロード ) (Updated April, 18, 2011)
murlet.tgz (649 ダウンロード ) (Original Version. March, 23, 2008)
see readme.txt (661 ダウンロード ) for description.

Experimental Results

A summary of experimental results presented in our paper.

For more details, see the above reference.