Murlet

Murlet is a practical alignment tool for structural RNA sequences.
It is based on the Sankoff algorithm and uses an efficient scoring system that considerably reduces the time and space requirements without degrading alignment quality.

Citation

Murlet: A practical multiple alignment tool for structural RNA sequences

Hisanori Kiryu; Yasuo Tabei; Taishin Kin; Kiyoshi Asai Bioinformatics 2007; doi: 10.1093/bioinformatics/btm146 [Abstract] [PDF]

Dataset (tar gz format)

murlet_dataset.tgz
see readme.txt for description.

C++ Source Code (tar gz format)

murlet.tgz
see readme.txt for description.