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Reference
CentroidAlign is an implementation of the method described in the following paper:
Michiaki Hamada, Kengo Sato, Hisanori Kiryu, Toutai Mituyama and Kiyoshi Asai, CentroidAlign: Fast and Accurate Aligner for Structured RNAs by Maximizing Expected Sum-of-Pairs Score, Bioinformatics 2009; doi: 10.1093/bioinformatics/btp580 [Abstract] [PDF] [supplements]
Michiaki Hamada, Kengo Sato, Hisanori Kiryu, Toutai Mituyama and Kiyoshi Asai, CentroidAlign: Fast and Accurate Aligner for Structured RNAs by Maximizing Expected Sum-of-Pairs Score, Bioinformatics 2009; doi: 10.1093/bioinformatics/btp580 [Abstract] [PDF] [supplements]
