Murlet

Murlet is a practical alignment tool for structural RNA sequences. It is based on the Sankoff algorithm and uses an efficient scoring system that considerably reduces the time and space requirements without degrading alignment quality.

Reference

Murlet: a practical multiple alignment tool for structural RNA sequences.
Hisanori Kiryu, Yasuo Tabei, Taishin Kin, and Kiyoshi Asai
Bioinformatics, doi:10.1093/bioinformatics/btm146.
Supplementary Text: murlet_suppl.pdf (810 ダウンロード )

Dataset (tar gz format)

murlet_dataset.tgz (706 ダウンロード )
see readme_dataset.txt (664 ダウンロード ) for description.

C++ Source Code

murlet-0_0_1.tgz (660 ダウンロード ) (Updated April, 18, 2011)
murlet.tgz (692 ダウンロード ) (Original Version. March, 23, 2008)
see readme.txt (709 ダウンロード ) for description.

Experimental Results

A summary of experimental results presented in our paper.

For more details, see the above reference.