Murlet

Murlet is a practical alignment tool for structural RNA sequences. It is based on the Sankoff algorithm and uses an efficient scoring system that considerably reduces the time and space requirements without degrading alignment quality.

Reference

Murlet: a practical multiple alignment tool for structural RNA sequences.
Hisanori Kiryu, Yasuo Tabei, Taishin Kin, and Kiyoshi Asai
Bioinformatics, doi:10.1093/bioinformatics/btm146.
Supplementary Text: murlet_suppl.pdf (847 ダウンロード )

Dataset (tar gz format)

murlet_dataset.tgz (740 ダウンロード )
see readme_dataset.txt (688 ダウンロード ) for description.

C++ Source Code

murlet-0_0_1.tgz (693 ダウンロード ) (Updated April, 18, 2011)
murlet.tgz (727 ダウンロード ) (Original Version. March, 23, 2008)
see readme.txt (733 ダウンロード ) for description.

Experimental Results

A summary of experimental results presented in our paper.

For more details, see the above reference.