A new software that calculates base-pairing probabilities on Hamming distance
from the given canonical secondary structure.


[1] Taichi Hagio, Shun Sakuraba, Junichi Iwakiri, Ryota Mori, Kiyoshi Asai, Capturing Alternative Secondary Structures of RNA by Decomposition of Base Pairing Probabilities, BMC Bioinformatics, to appear.
[2] Ryota Mori, Michiaki Hamada, Kiyoshi Asai (2014) Efficient calculation of exact probability distributions of integer features on RNA secondary structures. BMC Genomics201415(Suppl 10):S6 DOI: 10.1186/1471-2164-15-S10-S6