Murlet

Murlet is a practical alignment tool for structural RNA sequences. It is based on the Sankoff algorithm and uses an efficient scoring system that considerably reduces the time and space requirements without degrading alignment quality.

Reference

Murlet: a practical multiple alignment tool for structural RNA sequences.
Hisanori Kiryu, Yasuo Tabei, Taishin Kin, and Kiyoshi Asai
Bioinformatics, doi:10.1093/bioinformatics/btm146.
Supplementary Text: murlet_suppl.pdf (693 ダウンロード )

Dataset (tar gz format)

murlet_dataset.tgz (605 ダウンロード )
see readme_dataset.txt (580 ダウンロード ) for description.

C++ Source Code

murlet-0_0_1.tgz (551 ダウンロード ) (Updated April, 18, 2011)
murlet.tgz (566 ダウンロード ) (Original Version. March, 23, 2008)
see readme.txt (581 ダウンロード ) for description.

Experimental Results

A summary of experimental results presented in our paper.

For more details, see the above reference.